PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 20533
Common NameMICPUCDRAFT_20533
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 148aa    MW: 16591 Da    PI: 10.3942
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
20533genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-052346323
             ET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2  3 Cp..dCgksFsrksnLkrHirt.H 23
             C+   Cgk F    +L +H r+ H
    20533 23 CEhpGCGKEFAWAQDLAKHVRRaH 46
             77779****************999 PP

2zf-C2H2163.3e-055377123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             ++C+   C k+F  + +L+ H rtH
    20533 53 FQCShdGCEKRFYERKLLVAHERTH 77
             89**********************9 PP

3zf-C2H216.32.7e-0583108123
              EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
              + C    Cgk+F+ + +L+ H +  H
    20533  83 FACAhpGCGKTFRARNSLTYHVKAmH 108
              668888***************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015713.362151IPR007087Zinc finger, C2H2
SMARTSM003550.00912146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-92247IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802346IPR007087Zinc finger, C2H2
SuperFamilySSF576675.79E-82577No hitNo description
PROSITE profilePS5015714.175382IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-105376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00845377IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805577IPR007087Zinc finger, C2H2
SuperFamilySSF576679.32E-1564123No hitNo description
Gene3DG3DSA:3.30.160.601.4E-1377105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.92683113IPR007087Zinc finger, C2H2
SMARTSM003550.001783108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085108IPR007087Zinc finger, C2H2
SMARTSM003550.81114138IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGAATRPLGA PPPSKPPRGK VACEHPGCGK EFAWAQDLAK HVRRAHSGEA PKFQCSHDGC  60
EKRFYERKLL VAHERTHTDE RPFACAHPGC GKTFRARNSL TYHVKAMHSR AETLRCDVDG  120
CAFTTKKPEL LASHRAKHAR RVTERAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gli_A2e-12181421154PROTEIN (FIVE-FINGER GLI)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003061688.11e-105predicted protein, partial
TrEMBLC1N0S11e-105C1N0S1_MICPC; Predicted protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1065024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.13e-16C2H2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]